Scaffold Ga0058897_11189883

Overview

Basic Information

• Taxon OID: 3300004139
• Scaffold ID: Ga0058897_11189883
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15739
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (65.85%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.531427
  • Long. (^o): -72.189946

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004601	Metagenome / Metatranscriptome	431	Y
F102999	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058897_1118988310	F004601	GGAG	MLVGLRVHVNPTGETVEVRATVPVNPLTGVTVIVDVPAVPASALTLVGLAATV*
Ga0058897_1118988311	F004601	GAGG	MLVGLNVQVTPAGETVEVRATVPVNPLTGATVIVEVTAAPARALALVGLALMAKSRMLTVIVAE*
Ga0058897_1118988312	F004601	N/A	VHVNPAGDTVDVSATVPVKPLSGATVIVEVAVPPELAAMLVGLAVTVKSWMVKVTVAK*
Ga0058897_1118988313	F004601	N/A	VHVSPAGDTVDVSATVPVKPLTGATVIVEVPVAPAMAVTLVGLAATVKSTPPVTVTVIVAE*
Ga0058897_1118988315	F102999	AGG	VVPVHDSVEVCVAPRTTLVGLKVHANPAGDTVEDSVTVPVKPLSGATLIVEVAVAPARIVAVVGLAVTV*
Ga0058897_1118988316	F004601	GAG	MLVGLRVHVKPAGETADVSATVPVKPLTGATVIVDVAVAPARALTAVGLAVTVKSVTVNVTVAE*
Ga0058897_1118988317	F004601	GAG	MLVGDRVHVNPAGDTVDASATVPVNPFSGATVIVEVAVAPARALTLVGLAVTV*
Ga0058897_1118988318	F102999	N/A	VTVTVAECDSVPLVPVIVTVYVPAGPEHVRVEVWEAPRTMLPGFRAQVRPAGETTEDRATVPVNAFTGATVIVDVAVAPARALTVVGLAVTVKSLTLIVTVAE*
Ga0058897_1118988319	F004601	GGA	MLVGVRVHVNPAGDTVDVRATVPVKPFTGATVMVEVAAVPALTLTLVGLAVTEKSWTVKVTVAV*
Ga0058897_1118988323	F102999	N/A	VTVTVYVPAEPEHDSVEVCAAPRTTLVGLRVHVRPAGDTVEARATVPVKPFNGVTVIVEVAAAPARALTAVGLAVTV*
Ga0058897_1118988324	F004601	GAG	MLVGLRVHVRPAGETVEVNATVPVNAFTGATVMVEVAAAPARALTVVGLAVTVKSRMLTVTVTE*
Ga0058897_1118988327	F102999	N/A	VTVAEWLRVPLVPVTVTVYVPADPEHDSVEVCAAPRTTLVGLRVHVRPAGETVEDRATVPVKPLTGVTVIVDVAVAPASALTVVGLAVTV*
Ga0058897_1118988328	F004601	AGAAG	MLVGLRVHVKPAGETVEVRATVPVKPFTGATVIVEVAVAPARALTLAGLAVTVKSVIVKVIVAE*
Ga0058897_1118988329	F102999	N/A	VTVTVYVPPDPEQDSVEVWETPRTMLVGVRVHVNPAGETVEVRATVPVKPLTGATVIVEVAAAPARAVTLVGLAVTVKSRIFTVTVAE*
Ga0058897_1118988331	F102999	GAG	VPLVPVTVTVYVPAGPEHDRVEVWDTPRTMLVGLRVQVSPAGETTEVKATVPVNPLTGVTVMVDVAVAPASALTVVGLAATV*
Ga0058897_1118988333	F004601	GAGG	MLVGLRVHVNPAGETTDVKVTVPVNPFTGATVMVDVAVAPARALTAVGLAVTV*
Ga0058897_1118988334	F102999	N/A	VTVTVAVWVSVPLVPVTVTVYVPADPEQDSVDLRDAQNKLVGLKVHVNPAGETTDVSATVPVKPFTGATVIVEVAAAPARAVTLVGLAVTVKSLMLTVTVAE*
Ga0058897_1118988336	F004601	GAG	MLVGVRVQVRPAGETVEVRATVPVNPFTGATVMVDVAAAPARAVTLVGLAVTVKSLMFTVTVAE*
Ga0058897_1118988338	F004601	GAG	MLVGDRVHVNPAGDTVDVSATVPVKPLTGATVIVEVAVAPARAVTLVGLAVTV*
Ga0058897_111898838	F004601	GAG	MLVGLKVQVNPAGETVDARATVPVKPFTGATLMVEVAVAPARALTLVGLAVTV*