Scaffold Ga0066180_10159766

Overview

Basic Information

• Taxon OID: 3300004128
• Scaffold ID: Ga0066180_10159766
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 859
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008494	Metagenome / Metatranscriptome	332	N
F009750	Metagenome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066180_101597661	F008494	AGGAG	MTKKEVINLFMSAVGQYTSAIDKTAESNIQFKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQELIVAKREAEYLLETARANESRIKAEVDQMKYIIRALEAKEEA*
Ga0066180_101597662	F009750	N/A	SFLSINRIDRPKQTRVPMILKNAIFEPSHTMKEIVTAIYQNGEFTDNNILKPHLTDRIGIRMKFPEGAGCILWTNGKKYYAVCEAFGTVFTINIPRNIGDDIWDRFKTYYEGNYSYKPF*