Scaffold Ga0066179_10016404

Overview

Basic Information

• Taxon OID: 3300004126
• Scaffold ID: Ga0066179_10016404
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1474
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020007	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066179_100164042	F020007	AGGA	MRHTALNRTFTNSLDTSGTLRARAHQGLKAAPKGRGRKVAIVIGISLSIAMPLDAKANDLAIRYVKDLAKYQLTDKQEACHHEIIYRESRWDYRAVGNIGGTKQAYGLYQMKVESLRTGSTIKQFWMYWHYVAHRYGLTQYDEPNYCNALQHLKTKGWQ*