Scaffold Ga0066179_10005669

Overview

Basic Information

• Taxon OID: 3300004126
• Scaffold ID: Ga0066179_10005669
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2188
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014237	Metagenome	264	Y
F031484	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066179_100056692	F031484	AGGAG	MNKDKLIAVATTYARAAVPSVVALYAAGVTDPKTLAYAFASAFIAPLWKALDPKAKEFGRGSKA*
Ga0066179_100056694	F014237	AGGA	MDTLKNVMMRIFAVIAAESLGVIGAGSLVGIEVWQAATLAGALGAARVLEALARFYLADGSLTSEEINAAFAKVDKKASE*