NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058885_1012812

Scaffold Ga0058885_1012812


Overview

Basic Information
Taxon OID3300004116 Open in IMG/M
Scaffold IDGa0058885_1012812 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF206 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)574
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.531427Long. (o)-72.189946Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098405Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0058885_10128121F098405N/APLSNSFSSRHARPEHGIRNVVT*ALCSPPPALCRLRIDAPVRVRAFCVSIEARLSMRPFTLRRRRPTFRSAPAARSTLLAYIFETISRSASSPFGSALPPPHGLLWPCEARSPPETRCQIRSRNSLPVFRLSLPVGISQSLRIEALSLTPNQEACPCRLPDLPSLPAAPEIITYHVSASDHRSGSATSRQA

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