Scaffold Ga0062593_100064219

Overview

Basic Information

• Taxon OID: 3300004114
• Scaffold ID: Ga0062593_100064219
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2383
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.2958
  • Long. (^o): -89.3799

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034609	Metagenome	174	N
F061031	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0062593_1000642192	F061031	AGG	VSGLFDVIFARRGRRDPQLEAGIGASPRPQLWFCPSPGTPDWRALADPATFAMLAVDCDALQFYQDQLLDAPMPPLGLPRTALPPHGWNTWRAFREWGILSMAAAHNLRVIVESPGLKDWSPDPAVYVDRILESARIARAMGGSIHAVALDEPFNAGLNMWQPAWSVSHVLDHLRTVRQQVQQHEASIEVGLIEPYPTIDVQMLCSIVETFSPAFLHLDIDYRAARQRGSVKMLQADLVRLADCCRMLKVPFGVIIWGYEEHTAETFMRSARTLLAVVQQAVHRGDLSWPDRLIVQSWSATAVLGPRLIPPTLPPDGSASLWGLLRIVKRSL*
Ga0062593_1000642193	F034609	GGAG	MAQEHLSDDFDWVGAQAKCSAALMFERLQAHVEEDVRRRNGLLGRPDGWKFEFYAEDDEDVFEVSRLIGNDKVAAVVQFERVGRRIHIQGEDIDVDVTAIVTVDTSGVCRFVVGEAMYSDWELRRMALELLFFEEVEEPE*