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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004114 Open in IMG/M |
| Scaffold ID | Ga0062593_100000183 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19153 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (84.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.2958 | Long. (o) | -89.3799 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026134 | Metagenome / Metatranscriptome | 199 | Y |
| F030898 | Metagenome | 184 | N |
| F035093 | Metagenome | 173 | Y |
| F050582 | Metagenome / Metatranscriptome | 145 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0062593_10000018311 | F050582 | GAGG | MATTSLSGLEVLCLPELLVLIKRTAEWARNRRVLNPREAMVANEVNEAKVLYARARAWPLGEPLRRAEPKWQKPGDVEAAFFALYDRLRSKMSVRTRREREEPNAD* |
| Ga0062593_10000018312 | F030898 | AGCAGG | MKRHSSLKRVVLLGAVLSVGGALYAQRTPDKKLILNGKATSAAILQMDGHSYVDVEALAQITNGSVRIEPNQIVLTIPNTNFDANTAQPTPALTKDFASAAIATLAEMKEWRGAMGAMVTFGLAVDGSWAQVYHERVQASLEQATVAASTNADHNALQLLNTQFANLAKWESMVVAERQNHNGARTVAANSLRDDPVLIKFSSCGRFLSTMLGSGIFADNPSCD* |
| Ga0062593_10000018320 | F035093 | GGAG | VGSQVPAAGQSSAPQMVLAQKPVAPAITEFKAAPTPLLASSFLLFQDREDTFAFTSLRYLGPDERSHGLEHLSPVVKLKTLILTQVSLPLVQLWDGKLQLDAFQSTLRIQNGQFGALGYPAMPDPRLSQQTFPGGSRSVHLSGVSLNFNFGRVEQRPSLRQAWKCVPRIVASLLN* |
| Ga0062593_10000018324 | F026134 | AGG | MDESKFRSLAKWQISAPPRFSADSIQYLLRGEEQILQSISARAPISKILNDICNALDCQIGNTVSLISVPDNNVMSAAEVSSSAALFGLHIFISVAIGSESVEELGSLEMYCGVSRNPSPRELQLIDRAVCLAAVAIKRFLETGDGGNYRMRGVRSTRGYVPEPPTFMN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |