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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004114 Open in IMG/M |
| Scaffold ID | Ga0062593_100000063 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33854 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (75.76%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.2958 | Long. (o) | -89.3799 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000442 | Metagenome / Metatranscriptome | 1132 | Y |
| F006249 | Metagenome / Metatranscriptome | 378 | Y |
| F075263 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0062593_10000006316 | F075263 | GGAG | VSGAFFMVTVGFAVALAALLVWTLRSAHRRRGPGGLSVLESAPQHLCNMGPIRRSQHPADLSYAASRGGRELAKRLRRERKNVILLYLDSLRSDFEQLLRIARVVALLSPEVSSSYEYERLRLSLLFRARFALVKLRFLVGDRAMPQVSSLGEMVASLAIRMETAMETLGERAVLAANVALQSEQ* |
| Ga0062593_10000006325 | F000442 | GGAGG | MLFATVSRGKNRGARLLPHRFKDQRYHVQLGKQGPYIPLFDSRDIPRYLANGYSLQMSVAESVTPTLIRPESIRGWERNAWA* |
| Ga0062593_1000000635 | F006249 | GGAG | MKKPLLLCLFAMLLSCISAIAQQSQQAMQPLTFWYGYTVNPGKEDEFLDLVKTVGQPVRDKLMADGVVLAWGVQSSLLRVPGHATHFIWYAVADYAGVEKVDTAMRAQISKLTEEANKSGAPAKKGQKAAEAPMARLAQVADLSKVHDFLTRDLVIGLSSSSPSGVLPFTRFNFFKVKPGKGNDFRKAWEKYNKPVFDKLLADGTVLAYGLAVEEVRTEGDFTHFVWYDVKDLASFDKVRAAFLADRDRRSQEEQDALTHLFVSLVDPDASRSQVGRSLIFHVGTPK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |