Scaffold Ga0062593_100000061

Overview

Basic Information

• Taxon OID: 3300004114
• Scaffold ID: Ga0062593_100000061
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34116
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (80.49%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.2958
  • Long. (^o): -89.3799

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006246	Metagenome / Metatranscriptome	378	Y
F067980	Metagenome	125	Y
F087582	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062593_10000006115	F067980	GGA	MSVWRAISIFSSVLVSCLAVAPAWSFQSRIEERTDSKAENKEKSAKAKPAKRTVWNLDGGVFFATDGHLPNGACFRLSGQMHAPDFFDGLRRVDSEEGTFYYLRNQPVTEYPGEVQIVIHLLDFPCTLDLKDTNARPPITREMMATLRLNFFWKQGVYMRPVEESKRTAADIRRLGTFAAGPAADEELAPRYEWSYAFTVNSENIPLTNDLVLVIEDQEHKMAARVAARL*
Ga0062593_10000006131	F006246	AGGTGG	MTAQAASPVPMLSLQELYRQYTCLAAKPGEPVPLSAFRLSRTETEKVFSIFDEDYHISRFFHFHNEHGDKYSINGETATHVVIDPDIRLTL*
Ga0062593_10000006133	F087582	GAG	MPFTLDHRLALVLYVMLLLAAAAPIVVGWMRLLPPEREPFAKPGEKTDREGRDAFAIFLLVNITFSLLLRIPGVNLEALSAQLAKRLAPEWANHVVMVGFIWFGFIGGLAAAYSLIRRNPLRWPLMLGGALTLLLSLVSPFLVGAVRGTE*