Scaffold Ga0065183_10227012

Overview

Basic Information

• Taxon OID: 3300004113
• Scaffold ID: Ga0065183_10227012
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 811
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR1-KM17-C101 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 53.9944
  • Long. (^o): 6.8905
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012934	Metagenome	276	Y
F021435	Metagenome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065183_102270121	F021435	AGG	MKCPQCAMPLKWQEQHEYEDFNLEGEGIINVHFCTNIDCNVEEVYIFQKDDAQV*
Ga0065183_102270122	F012934	N/A	MNSLEILKAKINLKTTLIKFKSSLEELREKHEDRTDLIESMQESANDIEHFHNVFLQFEDEYYLECKANMRNQIIIAEHKHEIDKLNKLVENLKQGI*