Scaffold Ga0065166_10219817

Overview

Basic Information

• Taxon OID: 3300004112
• Scaffold ID: Ga0065166_10219817
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 754
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003182	Metagenome / Metatranscriptome	502	Y
F012454	Metagenome	280	N
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065166_102198171	F058101	GGAG	MTINPKDIHIATDGKIYSFSGFGGVMNCSDCDNDTMVNEYDRQDDGAVMWFCKSCEDRLHL*
Ga0065166_102198172	F003182	AGGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTAHEWFAQCMSCGTFGIKIVDDARIGELSQ
Ga0065166_102198173	F012454	N/A	LVVAKRLGYEYTPGITWDKTKADVSEHIEVKWSANPNSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPSI*