Scaffold Ga0065166_10155978

Overview

Basic Information

• Taxon OID: 3300004112
• Scaffold ID: Ga0065166_10155978
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 875
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015472	Metagenome	254	Y
F056602	Metagenome	137	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065166_101559781	F074878	N/A	MLCFMPYTIAMNTTDIVIVKFRSRSPRMLFSAYYNGILLASGSNAQDLGEDYARKYGTDWVLQDGNKFYTQGGVK*
Ga0065166_101559782	F015472	AGGAGG	MAHYYLNNGGTRWVTDNKIRVVGDVNGKTYSKMRQPMFWEALGNFALCYVRVGRTVYRGFSEDNNGVIELNLGKCVVVR*
Ga0065166_101559783	F056602	GGTGG	MSNWTKGFIGVAIASQVILFVTLFGCKTGDSFHITGVDMFGIVLSSICTLLYIPAIVISYETDKIRKKLDEQLQ