Scaffold Ga0065166_10085778

Overview

Basic Information

• Taxon OID: 3300004112
• Scaffold ID: Ga0065166_10085778
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1120
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065166_100857781	F077297	N/A	MTQQAKNQIKGATVIVVAVPICAVMQMMYISIKDSKKALEGYERRAERATHVIDSLEATNVQRMLQIEELNQQLERNKEIYEANISAIDSLDKHGLRRAMHNLLSSLTEERYPGQLNE*
Ga0065166_100857782	F047677	GAG	MKWLKSIFSNESDASSKRVASILALLVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFAKKKSNDTTSQESN*
Ga0065166_100857784	F084221	N/A	GIYLHSYKRDMSNHQQQIAEGVTGTISSILLSVPAWMLDVEFALKIFCLLLSAAASIFTIYKMNKKRR*