Scaffold Ga0065166_10003987

Overview

Basic Information

• Taxon OID: 3300004112
• Scaffold ID: Ga0065166_10003987
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3539
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F024551	Metagenome	205	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065166_1000398711	F001923	N/A	PPPPIDPESLPKELKDGIVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIQSPGLRMAVVGAAGYAAPECLDYLMKYIKARGEKEVAAVVGKPKPHGKGKAVTKRKR*
Ga0065166_100039875	F024551	N/A	MTIIKPDSLPRLWWLFPWSVARQLHKNAVALREMADNQSTTITNQAKILGRYMDENRELKAEVTRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGAIIPDAHPHE*
Ga0065166_100039878	F042864	N/A	MTTKTTKAELVNDRAMTELLKRKAINFRETASLKDRDGCVKGLGSYALYGVDHVRGQLVVLASEPTAGDFNKYVTAKAKAEVVARYDHVVEYRDAGSHSNPKVTILCWTKAE*