Scaffold Ga0008651_10169448

Overview

Basic Information

• Taxon OID: 3300004111
• Scaffold ID: Ga0008651_10169448
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_200m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 672
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F070548	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0008651_101694482	F005832	GGAGG	MSKDGIWQDSTGMKDSEIVKKWTKTLHTVEYAMEQLKYQKTALMKKKEDIVNSKETQNG*
Ga0008651_101694483	F070548	AGGA	MANWNSKELQTPDAIKKIGQNAQNVINNLDILLKLVKGGANVAKMFLLLSNPAGAIIKLAAEEIIKAANDFKEIGVFYLFINPNDDGYGNQTTRELGLAIKRDGLTGLYQFKPTI