Scaffold Ga0008650_1071369

Overview

Basic Information

• Taxon OID: 3300004109
• Scaffold ID: Ga0008650_1071369
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_150m_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 944
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y
F077180	Metagenome	117	Y
F081218	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0008650_10713691	F081218	AGGA	MKVGDLVKWVGGSSHNLRGIVVDRCGHFEDLGPRGEAKVIWDTKGLGSLKQKPGGSWQTASNLKVISSLESEDENR*
Ga0008650_10713693	F077180	GAG	MKRGDLLRYEVDGSLWLVEWADDKWVKIVGVTHPLLIEETGLEIVSENR*
Ga0008650_10713694	F024106	GGA	MEESTFHSSFQVGDLITLKHHPGAPIAMVTSLDAIVFDRIMIQFFDTSRPEMAAPGHWKVVSRNETRRPAEV*
Ga0008650_10713695	F014465	N/A	IGALVRDCSKIMKIVTGYKCSNRGEYVQFAGDHETAWYPLDSFEILSTDP*