Scaffold Ga0055584_101896590

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_101896590
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 612
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F065117	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1018965901	F065117	AGGAG	MKKKKTKKKVKLTVDGYYTDNNGMWTIYKTESGMTVMKKE
Ga0055584_1018965902	F003514	AGGAG	MVTPQEYNKLREEELILKAAKSSGANKAEILHGSLFVTFTPGFVDVLSQELKGVLEKLLDNTTVKMYNLTKDEYAYDFI*
Ga0055584_1018965903	F004191	AGGAG	MNKFKEIMATWFAVLGIFAIVGSAGAIETDQYMLAFTLFVVGSGTMFISIICQEKQ*