Scaffold Ga0055584_100914501

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100914501
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 918
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1009145011	F069451	GAGG	MKPGDLVRIRKSAIDAYCTLWFIDLAERKAPLLLMEKLNKQHWRVMRPDGTDCFLSENKLTTRMW*
Ga0055584_1009145012	F021674	GAGG	MERETYNTRLKTNPEDIPVGSLLRVKKWCRKNITIRNNGEYGILAPNGNGKYITHDVLFPNGTRCIYMPLNWEVVSYAK*
Ga0055584_1009145013	F006383	GGAGG	MLNSTDKMWAVQQPGTLLRARHSARYGQLALVLEEAYNGRMPSNGYPPTRWVKMQIVSTGEKIEESLTNAHNCWEIVSEP*