Scaffold Ga0055584_100866912

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100866912
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 945
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024922	Metagenome	204	Y
F044426	Metagenome	154	Y
F070652	Metagenome / Metatranscriptome	123	N
F094089	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1008669121	F044426	AGG	MKTIDKNLEQLLYITGQSHANTSAMSSSFGKLALIRQLITEVKNLKLDDASRIKVKIWLDKHKKEIEV*
Ga0055584_1008669122	F094089	N/A	MTIKELIEKLEKYNQHKNVVIYSNESDLFEYDFFGIYENNGQVELHINEGEKL*
Ga0055584_1008669123	F070652	GAGG	MTELKQDHFEVIDGNKQRAFEERKQMRVELVEYIDKCNTYELMKIYDEYKRLRKK*
Ga0055584_1008669124	F024922	N/A	MMNTKDLEKNRLLTKKDFDIFFDGHNEYDFKKMSINKLRSTYGVTHLINGKFKDMRGNCYKCLTPLRPDYTHHKNYCMDC*