Scaffold Ga0055584_100724567

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100724567
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1040
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004550	Metagenome / Metatranscriptome	433	Y
F068940	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1007245671	F004550	N/A	RGKDGDTSLFSGIKQPLITGGYGQEVAYQNDWVIYNSGDWDVTSGGGSDYQLVDYAGGWLRLGDDAPASGEITGLSGKEIWNYNSGKQWWYETRIAVTDVTEMNWFVGFADNAFVDPATVPTDCIGFSHLEDTTTIQFLSRKDSAGTSFDMTDTAGGSTFAMLDSTVPTQTATQFEIPSNSVRLGFHFQPAGTELGQTSAQYKLYLDGKKVGTQAATTVPDDIALELKIFIENKGTTANQLATDWVQTIQQR*
Ga0055584_1007245672	F068940	AGGAG	MANVSGVKSKQIVFGTDTDAISAAGTATTLVLLNSGPWVNAQTVTLTSSADNSGITFVVVGKDANGDAATSAAT