Scaffold Ga0055584_100329902

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100329902
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1570
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037985	Metagenome	167	N
F061354	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1003299021	F061354	N/A	MKVMIWVTESNLELLNKGEVIQYWAREPGDALNVMQVQISYDEFIRLRDNQPEHYVTRDHMRFINYSGMQDDNYYTSDRPEAYDEGYGVED*
Ga0055584_1003299022	F037985	AGG	MACIYPIAYMLVWPLIYGILPAYSNYYIFGGIYFTLATSMMAWAMWLHRDIKWSVPAYALVGVALFDCVDYWMLHNIFAFIFFLSSTYLMKTDKRFDWIGDVSVTWYVLLVIPGGVFWFEAIQAVLISWFHLSYVRRLWRVRTGKE*