Scaffold Ga0055584_100121930

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100121930
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2610
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F031151	Metagenome	183	Y
F089161	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1001219301	F031151	GGTGG	MREHFEKFNVSGKGLLPLSFSHLNEFAFYRERWALKRIFGYEFPSSAPAERGKAVESGINMILNGISFSEASEKMIAEFDDNCSRITDPKVDDERANLIPLLELGASKFKEHAYSWELLGYQKKVEVLINEIPFIGYTDFHFGDKKTKEDFFIDLKTSKTNPSQMSTSHAMQQSIYFKATNSRQMLWYLKTPTKTKAPEFTQLELASYHHYVKICEHIVNVMGNYLKTVNSPDDVRDSLIPNPDNWIWKEENVLNARKEVWGY*
Ga0055584_1001219302	F089161	AGG	MMSDKYNLSDELNQSRELDQDQEKETAIYKHLADIGVMDKLVFALNEYIIKFGRTSNVHDQCFDLKLQVLANKKHLQDWVDKI*
Ga0055584_1001219304	F005751	N/A	MDIYSIEFDPNKLSHQHEELGMRFADFDTAVELMKKEEKMIVAELTIYYSKNGGYKNMTELNGLIYSNKKFKDFFDRYQRNLKERNQSKIRFETFKAFRDDLRTKVVNERELAKHNL*