Scaffold Ga0055584_100099870

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100099870
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2890
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028003	Metagenome / Metatranscriptome	193	Y
F077798	Metagenome	117	N
F085559	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1000998702	F077798	N/A	MTDIGKKFRMIIENEDLFKSNPEAMLRLKYLVDNKKSFKNITKEEIEALYIYLNRHNIPQS*
Ga0055584_1000998706	F028003	AGG	MKVNQASGFDKYIIMCDKGQGKLVSDYPSYLKFKEVQNALVRISQTPGQTYMFGGEVHEKGMTCAQADRVLDDIFNCKTSMEMISLIRKVARQIGFHQMTVPGKIRWGL*
Ga0055584_1000998707	F085559	AGGAG	MTMSLQQTSDECGYALEAFGRVLKNNDIEAIEKAVGKPHIELVMEYQKEYRKIEVRNREIENEVNFNFIQSEKSEAVREWEQSWVDWVKSKLRFRRNES*