Scaffold Ga0055584_100044865

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100044865
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4359
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016882	Metagenome / Metatranscriptome	244	Y
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N
F105900	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1000448653	F016882	GAG	MAYYVSRVKIATDTPKGVKWLNESYLVNAVSVGHAEQLVHEDFKDSGSDFEVKSVSASPINKVIGTTKKL*
Ga0055584_1000448654	F057678	N/A	MVEYEVNDKVVFRFNNVNEVAVITNVRRHKKTITGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRQNFSKDMPLYLDGEGSGCVQHFERHNDLIFPTQGPRSF*
Ga0055584_1000448655	F061281	N/A	MNKFQKKVLKQFPNAYMESSVNGLRIINNDRYLAKEFYMPDTTDEDQAWEYAALACKLTQNFNRAHPSRMDLSDVENKLARINRRKRNGRRVK*
Ga0055584_1000448657	F105900	N/A	MGRVNNAFAYDKKRSQRMGKLYNTIDFNVNDKISADLFAKVPEKPIVGELEIGGKSFKVTYQELDAMMSTLNEAKRAVESKYRLGLMNK*