Scaffold Ga0055584_100044847

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100044847
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4359
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070557	Metagenome / Metatranscriptome	123	N
F077258	Metagenome	117	N
F079926	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1000448471	F070557	N/A	TMSNEIKQNIIRDLQGDVLNGDHYTINMFSCWLDGSYLGELHYRKNLAAITECNNNRKKLRSFVINAFTSYIAHDADCSYGYAQKVLVEFLGLDTLNKLNEQLIDYAIEFHSTNCEAA*
Ga0055584_1000448474	F079926	GGAG	MTTKVVAQPWYDMAIQDKFSIQVDELTFHILDELGKPIVNDDLTPMKFRSLRELDFITDYIELDDLEIIQ*
Ga0055584_1000448479	F077258	GAGG	MPIDPRTIRQIRMAAEQGLTQAEASRLLDMNQSYIARAKALYNIKFINHEEKYARFRSPQNDIETNENELTNDRGYEKPRPNQGQEILQMVSGGTTSFNGEYGVETEKPPKNIQELKQRLKENDKQHHYEIIYSYKLQEFEKQQIKLGFRTAMHKTRKVQSLSTSSINKNIALNSQSFPAKHEIAKQQRILKSIDRGGRYTTSMIARNTGLSVSYVAPQLNVLFNQGFIHRDNEKQPAFIGSIGGKKTLRYVYFKKNDE*