Scaffold Ga0055584_100015299

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100015299
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7535
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041249	Metagenome	160	Y
F048362	Metagenome / Metatranscriptome	148	N
F074909	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1000152991	F048362	N/A	WLMNVAAKWIWFAIMLPIRITLGLCFAVAKYMPKTVHLPYKVVKVEREQSSNNQTWWK*
Ga0055584_10001529915	F074909	GGA	MAVNPDIDPSSITNDPIVNNVVELIVKRHVQGMEKFGKTMEANNRPMDEWVNETIEELLDAIHYLTKMKSMFKKFDVDKAKVKGALQSLEKESTHENKEAS*
Ga0055584_1000152996	F041249	N/A	MTEEELLTSVTKRTKRNSNTKKYGMFGLSLGEDNYNRLHNYCIKHNLYKATLVKSIVMDYLDKAEGNDDNV*