Scaffold Ga0055584

Basic Information
Taxon OID	3300004097 Open in IMG/M
Scaffold ID	Ga0055584_100009310 Open in IMG/M
Source Dataset Name	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0055584_100009310 Open in IMG/M

Source Dataset Name

Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9636
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9636

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, North Sea, Atlantic Ocean
Coordinates	Lat. (^o)	54.18194	Long. (^o)	7.9	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Helgoland, North Sea, Atlantic Ocean

Coordinates

Lat. (^o)

54.18194

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053970	Metagenome	140	N
F078759	Metagenome / Metatranscriptome	116	N
F079930	Metagenome	115	N
F093697	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_10000931013	F079930	AGCAGG	MAFDKLVDTLNGFRKAYTNALGKSIKDNNLVATGRLNTSVSLPKQPKVKIFGGIYKMAITMEDYGLDLDEGTKPQGKRPNNFSFAENYGDIYEWLSNPTIRDKIGGFKGNSDTEKWTQSKHEGLAFVISRNLANYGLRPRNWIDPYTEPITRAVPSEIEEAIADDVALTMEQLKKFIESQG*
Ga0055584_1000093102	F093697	GAG	MIQQATIHKLPLLVGCKSFERNHTGQMLIDIISRFVEAEFPHIDDFKLVTAFQKAASGTLNLNNKPLALSTYGQQLSPKVVGEVLRAYIQTQRTKAAEPVFQPKQLTAPSDPIDSKFMYEWTINYIQQFGRLPEYPMWGLIYQYLLERNEVKALPDEKPGGRYAMMQEVDNRYQQTVVRWFQNNGVV*
Ga0055584_1000093104	F053970	GGA	MICHSKQQAAIDLLADDELRELAVRICHRYADDLIQEAAMVILEMDERKWNKVNDGGYIRFYIVRTMMTMATSPRSTFARKHGLFAHNKQVPDIADDADGYDWEQEDDMTIIEALLDSYHWYDKEVLRLWLQEGSYRKVAAKTDIPFKSIGNSVRRTLDQLKEDYYGLIIERCIRSGHRITADRSHQHPDIH*
Ga0055584_1000093105	F078759	N/A	MDKNEILLFINERMPQLQMMAARQFSGQLTKSEVKGYEDTYKTIHGNARVCFTCGNSAQTMARVMLNFAEENKPKPRAKRRRKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0055584_100009310

Overview

Ecosystem & Geography

Associated Families

Sequences