Scaffold Ga0066177_10021464

Overview

Basic Information

• Taxon OID: 3300004096
• Scaffold ID: Ga0066177_10021464
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2084
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F007921	Metagenome / Metatranscriptome	342	Y
F073565	Metagenome / Metatranscriptome	120	Y
F078716	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066177_100214642	F073565	AGGAG	MSDGKDLNGFNEVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNGGK*
Ga0066177_100214644	F001280	AGGA	MCIECGCEALGSETGIVPVTITDVSTDGASGLTLSMTATPEQRTDFINE*
Ga0066177_100214645	F078716	GAG	MSDNGTGMATPPVSEPSGAVTSREVARKNPKQGLRSGIKVDRNKHGIRRETSLVPKPPRKTRPKKV*
Ga0066177_100214649	F007921	GAGG	MIEWLVNRIFRWDTLRKAVFDEVRLYQSVDRSMWEMEKEGPTNLTWSEGNRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWKREDEVLNKQN*