Scaffold Ga0062387_100150356

Overview

Basic Information

• Taxon OID: 3300004091
• Scaffold ID: Ga0062387_100150356
• Source Dataset Name: Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1340
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004502	Metagenome / Metatranscriptome	435	Y
F026928	Metagenome / Metatranscriptome	196	Y
F075137	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0062387_1001503562	F004502	GAG	VDGNTGKPAEQFRASWQAAADALNEWSRRISDATHEAMDKIEPAFRGAVEAGRAAMTGEWRNCRCQCDTAHPADAGVCDSRAVMTRRVGGADVSLCAPCAVAQGVAEMRL*
Ga0062387_1001503563	F026928	GGAG	VLVLVGAPCMPCPFFMFWQLCMALCEAEGDGVAAVAADPLLAAVVPDADDDVDEVVDAGVDELLVAALATAMLTPRPTPSAPAPTAAVIMILPRLDLNVSSSSW*
Ga0062387_1001503564	F075137	N/A	AAGQFGEPGQQQVAAWTSASGTSWTPAPIGGLTGPQTGGSYQISALAPSGNTITGIGSLATQASQEVFTVTLPAR*