Scaffold Ga0063454_100000899

Overview

Basic Information

• Taxon OID: 3300004081
• Scaffold ID: Ga0063454_100000899
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4663
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057725	Metagenome / Metatranscriptome	136	N
F080564	Metagenome	115	Y
F089092	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063454_1000008991	F057725	AGG	MRPRVLLVLALVVVAVGCSSSPPDPYAAYRQTSTEDVPGTLDWQIGPVPTDYRASIGPADAYDELFDAGDRKQAYAILGQVSNTSDHSVGPPAWVFVTPKTCYATAKGDLVSPGRTGNGCTKQNLYVQGVNATTGERLGGFTAFDTPTPWVPARAGTPDVVEAEVQAGTTLLH*
Ga0063454_1000008994	F080564	GGAGG	MRRLMKLFVPVAGTIVSVALVASPATANMQVSSVNHVEYRYTDSSICPFDLRVHLHGSYKNVDYYDNTGFLYKTIDTPGGGEPFAVSYSAKGTTLTQRNDAFSTVVIYNHDGTWTYTERGPVNRFTAPGVGIVLLDAGIASWSEPDETLLFMGGPHQAANGDFVAFCAAFG*
Ga0063454_1000008996	F089092	GGGGG	VTIDERLRSGLGARAELTDSEIERKLSVTLQRGRRRRTLRRVGSAVVVGVMALGLLVALPKLLSTSNRKEPVGPLSPSIKAHSPSPIVGTYTLVLGPRDPGAQRLHAVGTWVLTFRDDGDASLSRGNAVGAGGYRLVPASVLITGLFDSCQGTEAGDYSWVISDGVLRFFKPSTDPCPLRRFVLLGPGHGHGWVVGPAT*