Scaffold Ga0062385_10291265

Overview

Basic Information

• Taxon OID: 3300004080
• Scaffold ID: Ga0062385_10291265
• Source Dataset Name: Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 931
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030254	Metagenome / Metatranscriptome	186	Y
F031230	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062385_102912651	F031230	N/A	EMRNAVTGLLLAGATSAFMLATPAFAQVAGNPGDLHTPTPYTNEVRSNSYGYTPGFGGPLGVIAAPFTAPVAMMNGAPGAGGCGVSQDFNGRLTALCGL*
Ga0062385_102912652	F030254	AGGAGG	MNNAFLALTAAGFAGLSGYGINVQTSPVQTAQVVSSTPDYTEEAGVFSQWLTTNAPQCVAVSKIGSVAHLTKLTPEQFQFVRALYIAIPPISRALPPGDSAMIASANGHSMVALVSGGETCAR