Scaffold Ga0063232_10228051

Overview

Basic Information

• Taxon OID: 3300004054
• Scaffold ID: Ga0063232_10228051
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 559
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013184	Metagenome / Metatranscriptome	273	Y
F077309	Metagenome	117	N
F096665	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063232_102280511	F096665	N/A	SEYENQCRDCDAIDQMEYCENDCGEICGNCHWLGEANLDDVANCDEHKVYLDTNVPEHRKVKSTYTQEEALNG*
Ga0063232_102280512	F013184	GAGG	MAKLKDYAFVIKLAGSVSAKNEKEAWKKINSHVDDLGDVESLKYDLSWPDVSWELEYEL*
Ga0063232_102280513	F077309	GGAG	MTDLVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVMELTCPCGRKTTLVSVEHAT