Scaffold Ga0055490_10072956

Overview

Basic Information

• Taxon OID: 3300004052
• Scaffold ID: Ga0055490_10072956
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 933
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.198971
  • Long. (^o): -122.026955

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006289	Metagenome / Metatranscriptome	377	Y
F049538	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055490_100729561	F049538	N/A	SLARTRMRNLFALLALLGVAGIVLGVMTMVQGAASPHGMPFHLESYGGPGPIIAGLGMLLAALYLRSAWRGRN*
Ga0055490_100729562	F006289	GGCGG	MLPILQGMKEALEQLRSRHRRRLAFLSPAIERRRPRILLEDYAARNLIEHTLDRKAELRRLVPLMPEAAARYHQLLTFELLGLRELVRVLESTPGGRELQECLEENRAEIERLEIEVAWCAGYLSPCPGAASTA*