Basic Information | |
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Taxon OID | 3300004051 Open in IMG/M |
Scaffold ID | Ga0055492_10004159 Open in IMG/M |
Source Dataset Name | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1931 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: San Francisco Bay, California | |||||||
Coordinates | Lat. (o) | 38.224518 | Long. (o) | -122.019257 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F046091 | Metagenome | 152 | Y |
F074182 | Metagenome | 120 | Y |
F095701 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0055492_100041592 | F074182 | GGAG | MSNTKGQEKISVGKGTCVISWSKMGKEELICALGTLLDLIEYGDKYSAMPEFVDPAFKREFDTIMKMLKEPSKKVTQL* |
Ga0055492_100041593 | F095701 | GAGG | VSAFDVVFATLMISSAVLVFLKVKKLITWDWSIVLAPSVIAFLIKIHFIFVNRG* |
Ga0055492_100041595 | F046091 | GGGGG | MEIKLTASYVLTDQHSKSSLKMPVLVNLRTNEAYNPSDLLEAYPSWGNTQARDVVKRMVNGKAFSDQEKYFIERFTGKVFS* |
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