NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055436_10186526

Scaffold Ga0055436_10186526


Overview

Basic Information
Taxon OID3300004024 Open in IMG/M
Scaffold IDGa0055436_10186526 Open in IMG/M
Source Dataset NameWetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)645
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.045666Long. (o)-121.866516Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034869Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0055436_101865261F034869N/AGQGQRAAAVEAGTTMGSSFNRYYTLQLKGKGFRDLARLERPDYPFPPSIFVAKKDTLQSKRRAFKALLTGMMDASERQKSSKELSLRLIRKNLRIQNPEVVEAAYEDGVTLSYPYFTERQFKISLELLEKSMDQPVQLTYRQVIDHSILDEINRPGMNRP*

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