Scaffold Ga0058689_10130712

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0058689_10130712

Scaffold Ga0058689_10130712

Overview

Basic Information
Taxon OID	3300004016 Open in IMG/M
Scaffold ID	Ga0058689_10130712 Open in IMG/M
Source Dataset Name	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	561
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Guanajuato, Mexico
Coordinates	Lat. (^o)	21.0936	Long. (^o)	-100.2988	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003271	Metagenome	496	Y
F054650	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058689_101307121	F054650	GGAGG	MILAAWLLSLPFRLLAGLGLRRSVTLACLFVLAVTAYGVAQDLGVIDPPAQAAPARKPAGQPTPSRAAAADIPAGYLRLY
Ga0058689_101307122	F003271	AGG	MTAAFLDFLGWDGLTAPEQAAALAGVGLGLAAWLLARALFGGRRHR*

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