Scaffold Ga0063233_10003165

Overview

Basic Information

• Taxon OID: 3300003986
• Scaffold ID: Ga0063233_10003165
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3302
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011754	Metagenome / Metatranscriptome	287	Y
F023522	Metagenome	209	Y
F024537	Metagenome / Metatranscriptome	205	Y
F042301	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063233_100031652	F024537	GAGG	MKDLEKEILDELGTKMQSEIDREIMWGMLKNLGWRRVNLDRFTDNNHAVDITYWLAEHCNHAFERRGADFIFESEIDAVNFTLRWQ*
Ga0063233_100031654	F023522	GAGG	VIDPNPTPTILRAQRAEEHLKVDERLMALLDSYHAIVLRDDDFAEKLTWCLENCQNKFRDLSDSNGRAWYFQNEQDAMLFAMRWA*
Ga0063233_100031655	F011754	GGAG	MKIGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLAEVIEQYMYRDDDYLYGLDESKCQTVALELWSTNKILQPRRQGLHRHRQPENSIWVDMFPTELSENHSVKSAWDAYRFMLHMTENVDNEAVEIFKQ*
Ga0063233_100031656	F042301	AGGAG	MVKVGSKWVGVSDTFRVIHVIELDGHTWIHYIKENASEDTNREYSCYEESFLSRFRELPND*