Scaffold Ga0063042_123688

Overview

Basic Information

• Taxon OID: 3300003981
• Scaffold ID: Ga0063042_123688
• Source Dataset Name: Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1185
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location

• Location Name: Mid-Atlantic Ridge
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000161	Metagenome / Metatranscriptome	1845	Y
F005131	Metagenome	411	Y
F066140	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063042_1236881	F005131	AGGA	MKDIKKKLVRQVKRSRPSLAQEIKDMPMKDFRALWFVVQQGLKVKKKH*
Ga0063042_1236882	F066140	N/A	MKDKKPMGVNVLDIKFYKYDEDGNDILNKDGTTKEFRLKAMRFKPLEYLCEGMSVDDVEEIKE*
Ga0063042_1236883	F000161	AGGAG	MKKFTIEVSNASGPQLQTIGLELKIMSNAWTKFGPRIKINGDKLQAPSLTEPRHKRQATSSKLGLTRL*