NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063042_120939

Scaffold Ga0063042_120939


Overview

Basic Information
Taxon OID3300003981 Open in IMG/M
Scaffold IDGa0063042_120939 Open in IMG/M
Source Dataset NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location NameMid-Atlantic Ridge
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020920Metagenome / Metatranscriptome221Y
F026850Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0063042_1209392F020920AGAAGGMAGIIHGRVTVASAGTAVRFTTVPTPIKHLLLEVPSANTGNLYVGDSTVASNNTPVITKGTTRDFTFRHDAEEAPGDLSDFYADAGTSGDVINYLAITI*
Ga0063042_1209393F026850AGGAMTTENNITITMQDVDVVRTVDPNFNKQLLIAAASRMRAEMTQNIEQEATKKAKK*

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