NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063042_102717

Scaffold Ga0063042_102717


Overview

Basic Information
Taxon OID3300003981 Open in IMG/M
Scaffold IDGa0063042_102717 Open in IMG/M
Source Dataset NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5422
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location NameMid-Atlantic Ridge
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006198Metagenome / Metatranscriptome379Y
F011620Metagenome / Metatranscriptome289Y
F019388Metagenome / Metatranscriptome230N

Sequences

Protein IDFamilyRBSSequence
Ga0063042_1027173F006198GGAMEVELDVDCNNCNAKYTMMYEADDIRSRQEEHAFHCAFCGILMEPYYDEFFEED*
Ga0063042_1027175F019388AGGAMRTPNEQNPYLVETKNGQILKFSKIDADNEAVIKQLDGDDVEVYHDGKLQYKLHGIEQGKLF*
Ga0063042_1027176F011620GGAMIDKIIQVVLKFFGKEKPEPPTEENNESLEALERIEALDNIGESS*

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