Scaffold Ga0063230_11421020

Overview

Basic Information

• Taxon OID: 3300003938
• Scaffold ID: Ga0063230_11421020
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, California, USA - surface sediment Aug2011 Site C1 Bulk Metatranscriptome (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1304
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: California, United States
• Coordinates
  • Lat. (^o): 38.1075
  • Long. (^o): -121.6497
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089118	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063230_114210202	F089118	AGG	MLPCSVKRAGTLTGRLPALLSCGMTRLIWVIIFAVLVGALVLISLKSLPGTRVSRQLAEVQQTHDILAKRFPDSRFRIQFSTPRPDLRNLVVTIQPGRADSASIAAQTDSAESIVRRTVDLSRYDSLVIAVFDRVYRVVPAR*