Scaffold Ga0063391_1005971

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1005971
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37759
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (70.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007944	Metagenome / Metatranscriptome	342	Y
F008913	Metagenome / Metatranscriptome	326	Y
F025144	Metagenome	203	Y
F046419	Metagenome / Metatranscriptome	151	N
F074046	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100597158	F008913	N/A	MLIFYPKLDNGNILWTCDNCGRTAEVSCADTNAVALVCHCDMNVHPRCNNDWYYKSLYWNRIPLENRERYRKGRSKQHERDTKE*
Ga0063391_100597172	F025144	N/A	MNKKIKKVFKKLDPELQEAIKFLINDIQVKREIKKLEKNENKA*
Ga0063391_10059718	F074046	AGGA	MSEYSGCDDFTPIRRSYKRAWFGEKLFVDTYGRAPNLSDVPMTYMTRSEAFKKRGLTRKEINKLWEKRAKGE*
Ga0063391_100597180	F007944	N/A	MKMESWSGYEKYIVMLTSYNSSVTGVRMGYQAYLDFKKVREALVLISRANANDSYSYESNIYKRPITSSRASQILEKLEQCKWDEDIRVVAKQIKAGFMLSPSR*
Ga0063391_100597182	F046419	N/A	MERYKNIADFVEAWGDFKDARVGGDTKAHWVNPSGKVYDVKDTHIIFVSEKPSLFKTTTEKMKKLYD