Scaffold Ga0063391_1002772

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1002772
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29282
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (67.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007774	Metagenome / Metatranscriptome	345	Y
F033843	Metagenome / Metatranscriptome	176	Y
F057690	Metagenome	136	Y
F080155	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100277219	F007774	GAG	MSKKDKLTPEQEKELIKLSAEIEAEAIAMKVDYDKNPSHESGSVVYVNELSSLLEDEDERLGDKALISSSQILAKELKKQKKKGEK*
Ga0063391_100277239	F057690	N/A	MKEWYHIKATHPTIGVVKFWLHQKNENDVRKLVTKKGYTDIEWIRQETPPFI*
Ga0063391_100277248	F080155	N/A	MINTYLSLEYISIVLFGLIMVLFSIGSAYLNIEKDSKDE*
Ga0063391_100277250	F033843	GAGG	MKIRKTLYYILGFFLFCGWADLVWGQTEKWSDESITLATTLTSLSVLDARQTFHMEEYRMYYDKLEPITYAHEVNPLIGKSPTKDRVVMVKVLSGALMYFGLNKMKEKNRMKALTYLNVFYFIVVLHNASLGLMS*