Scaffold Ga0063391_1002405

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1002405
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51989
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040851	Metagenome / Metatranscriptome	161	N
F046976	Metagenome / Metatranscriptome	150	N
F093904	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100240558	F040851	N/A	VNSVKCIRLDTGEVLIGFVEKKWNGDYIISEAQVCVMEVKDGTMEVNLAPWIPFAKDYTFTINSGLIQTVFEAKPQLETNFKVATGNNLQRGKVRK*
Ga0063391_100240570	F093904	AGGAG	MSNQVNDNIKEDIMENILEMADKDIWNVIFAIEKEFGIENVPSPVGGEHGFIAKLFELRFEEACQ*
Ga0063391_100240572	F046976	AGGAG	MRNQYVITTQNVEEYGTNFHKFKGGSDYVIGFDVGTLVYEENAYGEGEHSYYHSPSLTEASAAALVMKHVNRYNGLNGSFDYITSIEVQEGDFRSDEIDNPTWVGDISELIGELELHEVS