Scaffold Ga0063391

Basic Information
Taxon OID	3300003937 Open in IMG/M
Scaffold ID	Ga0063391_1002362 Open in IMG/M
Source Dataset Name	SPOT_150m_metagenome_year
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Davis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003937 Open in IMG/M

Scaffold ID

Ga0063391_1002362 Open in IMG/M

Source Dataset Name

SPOT_150m_metagenome_year

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of California, Davis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20545
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (73.08%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20545

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (73.08%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location
Location Name	San Pedro Channel, Pacific
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.42	Alt. (m)	Depth (m)	890
Location on Map

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Source Dataset Sampling Location

Location Name

San Pedro Channel, Pacific

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.42

Alt. (m)

Depth (m)

890

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008152	Metagenome	338	Y
F013575	Metagenome	270	Y
F023217	Metagenome / Metatranscriptome	211	Y
F047318	Metagenome	150	Y
F054342	Metagenome	140	N
F071306	Metagenome	122	Y
F084709	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100236211	F013575	AGGA	MEPVNLTWFYFHCVLALIIIVKDHNGTLEESLDNFEKKVGLYTYVDTSEEEVDVPYYIPPRSEVDSTWILPDSLRRN*
Ga0063391_100236225	F084709	GGA	MTKTKYNVGGVIVETDGSYENKFRVLRMAMDNWSKKNAGISIDSPKGRQYSTDWDRYLKLNELFKFHKPDFIKKKHMIEVNGLYRRYNG*
Ga0063391_100236229	F008152	AGGA	MSKEYDPLEWYKDQICQMSWDEILELMSERIKNGSWDKFVESLGAPPHVIKHDYEMERTK
Ga0063391_100236230	F071306	AGGA	MTYREYKPTWLEQKIFVDTYGRDYNLSDVPMTYMTREQAYDKRGLSDEEIDVIYEKWISEQEENE*
Ga0063391_100236235	F047318	GGA	MKKTKTKNTPVKYTEKALAYFQEMNDQDEFMTEPVNGDYVDYLLGDMGNNSYQGTQMDTEFEDLGDDSDWFMD*
Ga0063391_100236238	F023217	GGA	MKKWKTPKAIASQKKIDKGLAAFGKSIGLDKPFFAAQTFDDTSGTWKICPCCGGDSIIADFV*
Ga0063391_100236250	F054342	N/A	MNTKLSYKKLSKRWRDLTIALALPIMILNSVMDYYYGWEARQQVIQEDYKLKWFILSHNHTEYFPSETIIDVDGNPIFFEEGGGEVDLDKLREKGFGDMIPSPTDSFTPEAKVDSYLSKIFQPIKNQVDRFSNWWRDLFKEEMIKDMRG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0063391_1002362

Overview

Ecosystem & Geography

Associated Families

Sequences