Scaffold Ga0063391_1002074

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1002074
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72156
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (16.35%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022998	Metagenome / Metatranscriptome	212	Y
F031473	Metagenome / Metatranscriptome	182	N
F044507	Metagenome / Metatranscriptome	154	N
F061838	Metagenome / Metatranscriptome	131	N
F066233	Metagenome / Metatranscriptome	127	N
F068848	Metagenome / Metatranscriptome	124	N
F080617	Metagenome / Metatranscriptome	115	N
F084185	Metagenome / Metatranscriptome	112	N
F086290	Metagenome / Metatranscriptome	111	N
F088292	Metagenome / Metatranscriptome	109	Y
F099229	Metagenome / Metatranscriptome	103	N
F103276	Metagenome / Metatranscriptome	101	N
F106091	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_1002074104	F088292	N/A	GEDAVYDLCMEEAYVENEFFDSRTKGCDESIQVGVPNEEWTKTGGFQALAYGENEY*
Ga0063391_100207412	F068848	N/A	MNMSIDTQYGMLFKFMNQSRSKYMGLDLTYDFELLPENRISVDIFAEGNFDLPIRTKQMFRNMFMEFFLKDSKYFNIPRSTVGLLDFNNILLNGERLGDRITMDDNFKKDLVNVESKLKKYYSIDIADYPQGSFRLESFDNDLKTYIEILDEDSLMYTVDIKDSQKITLNGNEFNRNTIVDFLDSVDIGSPDTDPDSIFESISNAVWENSVEGDGTSLELFWDKLMSNGMNYQNYFMENVGMLSVVNLNSYDGMFNDNIHNYNTESQSEVLSIFVGWLETNKGKYKL*
Ga0063391_100207413	F061838	GGA	MNNMFNKIMPKSYDDIAKYSNMVMDHEVLDGKIKDIELDFVPSKEPIKYGGYEMIQPGTLVINVILNTEGFYEISDSMPELKKVYKLRPELEADSFLEFNGYEFIKNVIFPYISQKFLRLMGLSLGDVPYVDFNLINHRGETILNYDEDLDTFIGSENSSVWKKIS*
Ga0063391_100207417	F066233	N/A	MELENSLDSELKVEAQEKGKMAVKVLDALVFSKFGGIEYSMMIRKNRANWQNTASDTIPFYFEFDVDIDVDKTFEPSPTYDKKYGEYIYEIGDHIGRALRYVNLQDYMDEPMFTYVNDELVDNEIDRLENKLILYLQSQYEGLSYDSIREADIGYYLYKGETDNPYMRVEYVGQPPLRDGDRQSTDTIEEREYFSCDDLYDIMSDLFDRSPLSISYDGENFTCQ*
Ga0063391_100207418	F099229	N/A	MDKDIDKIVEIGKVLLNTPTLRSIYKDKFEINSIDFEFVEKTSNSQFTAQYEHYIFKVTLYTDISLNFDEGIRSGEIEGYDEIENEIWEYGIDPFYLADVIIPEQILNIILPKGKNGPKVAIELSIIGDEGQVIWNDHMFGRPASSQFH*
Ga0063391_100207419	F080617	N/A	MEDNKLKWSLEKLLNTVGRNLAMNYYGFDSEYEVVSIIDEKTGEEVTDFNFGDTENYTAIVRAKEILPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAIQLVGPEWKPGENTFRTLQSFEDKWGRSLDRDANDFKANPDAWIELNNGSVVDKLTGDSFPLMFNGLIDKTEMWNIARVDDDEWWGSLTDLDKERLTDNFS*
Ga0063391_100207427	F086290	N/A	MMSIYDKLIDSLSGYAVPYEDHPQLSTRDFEYDHPLTGIENDPIVNIDNLSFNINTIEDLSLDEIVKIYDELVIASALTLIREYDEDDRTELFTYYKGRKNQYNDKKIPRTSAIYLRNLKNHVNSVVYKIKAKQKEERATELLPTLEKFLEIHKKGNPKMYPDWLKLNFKEIRWGDLYVQPIINLEKLLESGDNIKKAKNTRDFVSRIWNRLVNANSSNYDARQKSVSVKTTYVLFEDFDSYVKNVVNKKIKPEIKNLPRGKSCVHSIVFRYRKKLEDIEVQIHPRYRSECTQGWNRLDTYIFEQKIEDILSDYGWVKGVNYETSTYRD*
Ga0063391_100207432	F084185	N/A	MIKKKYKKEDRELLDSIKELNRTAVVLEIKLVGTSKVKDNLIYECTYLDGKTEKTVSIIAQDVTQALAKLEQFTNSGIPQSVLKYMLGSERYT*
Ga0063391_100207437	F022998	N/A	MEFNVFKDKFSKVIFAVTAIGATITLINYVGPVINYANDLNDLVQQYEQINESLDRMDKHIDQYEQDRTNKKKSFSIGLRSDTESGQVIYVDENNGIYRAFLNKNTKQYFYYDIEGVAVYCYTKKPVGGEERHVEIKPLIIPDSLIISNIDSIQR*
Ga0063391_100207443	F106091	GGA	MYMMDSNQITPEMVYKFIDGLYKDTYPGLILDYKVEIVNYDDKEIKRLHPDVNLHVLMDDKVYRNTGEGYLAVQDMEDKLKGILKYLPYPSNVNIIRYISESHENFSKKKWEDRTKNL*
Ga0063391_100207445	F031473	N/A	MEEIREFIESSFTPRVAEDMNGIKVIFTSTVGDGIIWFEPAKRGWSKKPLSTNQYIIVDADLNHVLTFLNRYYQLDESNYHDIRRMFIDIGMDTVDKHTKGADNI*
Ga0063391_10020745	F103276	N/A	MGTSMEKFLDKTKSDNKIVDMYTDVRKWLQSEGHTTITSQSISKAPHDIWRLMENLRGEVSVLRDTLRRYGILESDDVYEEWLKSRLSKIDKQYPLIDERND*
Ga0063391_100207462	F044507	N/A	MSKEYKDLKSVISKYNKVIVTGPHGAGNKIMTKIISKDFNLPEVRGEYAWDLNGYNEEDGIRTFHKNHMNDKYSSFGPSQSGHLHRITDYLQDVLVVFMYKDMDSIERYSERNKFVKDQSHKYEWGVYRQMVMEDFPESAQYLRKSIEQLTYHIWENHQRVLIPNWVEVSHSSLEGHELWISKEDRKEFKEWQTTF*