Scaffold Ga0063391_1002073

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1002073
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40857
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (75.93%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018549	Metagenome / Metatranscriptome	234	Y
F087221	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100207320	F018549	AGGAG	MSEEITNETEVQSAPGDKNWKAIREENKALKDELAQYQVKERDVLFQEIGLDRTKGIGKAADQMYEGDLAADALKAFVSEEFGEEVFGQQDSFRETVNAGQDRLDNLASQAQAVSANTSVQEQIAEAQQTGRVRDSIATKMKALEELEKNK*
Ga0063391_100207323	F087221	AGGA	MSTNIKGLIDRTYREYLEPMEDMVSYTVLSGALSVSDTSVGFNGDLLSTEEEDALDAGTIIEIGQELMICTELNVVTNSITVTRAARGTTATTHNAGDVIKITPQFPRVNVFNAIKDQIENLYPTLYAVETQTISSAVGYVALAGADDDRIVAPLKAVSQYQELDAGNQTTVQFRGVAMELIDVPTTVTASGKVVQFSGVSNGVNVHCTFKKKFGEVKDYDSDGDAEDTTLAEIGLETEYEPIIMAGVAAQMISGKDIPAYTADYITEQMQVTNYPVNSSSNIRNSLLQYQQVLINQARKDLRARYPEPVSVNSVVYPSA*