Scaffold Ga0063391

Basic Information
Taxon OID	3300003937 Open in IMG/M
Scaffold ID	Ga0063391_1001813 Open in IMG/M
Source Dataset Name	SPOT_150m_metagenome_year
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Davis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003937 Open in IMG/M

Scaffold ID

Ga0063391_1001813 Open in IMG/M

Source Dataset Name

SPOT_150m_metagenome_year

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of California, Davis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32207
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (70.97%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

32207

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (70.97%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location
Location Name	San Pedro Channel, Pacific
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.42	Alt. (m)	Depth (m)	890
Location on Map

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Source Dataset Sampling Location

Location Name

San Pedro Channel, Pacific

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.42

Alt. (m)

Depth (m)

890

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013575	Metagenome	270	Y
F032623	Metagenome / Metatranscriptome	179	Y
F036269	Metagenome	170	Y
F072238	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100181326	F072238	GAGG	MINIGVKTYDIRDFFDETFVQEYKQVVIDYRNLLDKGLPTTKNDGNSTNNTDLIKWIEERTDKDFSYLYNKGQKEYQYDYKFVRAAYEYLDSINVDENWDLKSLSSKDVIPNLSSLSLMYDPPESKTNKYYLMSDKINEVILKNLIDEFPYMCNSLDDIRWKTNEWFGHMIAMPKGAFMSFHRDQTHNRPLTILNYVNTDRTREDGGLYRYYLHKDFDVEDKESLDWSKYPDYVYYRPIPQEDVENVKSLRYKYHNPPNKTPEYLESLDIFKNHNQYTIVPNYTTVNVMLHLNQKTKEEDKKYFLLETPPSSDYTGEQGIPHLVTKNMSDEVRYTLYRRVEWTDS*
Ga0063391_100181334	F013575	AGGA	MNLTWFYFHCVLALVVLVKDYNGTLEESLNNFEKSIGLYTEVDTTEYEAPPFYIPPTEQVDSTWILPDSLKIKNNRT*
Ga0063391_100181349	F032623	AGGAG	MDDTWIWIIIYMMPVTVVMWILGMWANHEDYKKEHNIKGWSDKEMNAKQIILTSIVSTIVGTTGWLGGVYYGSANMFETIYENVGNELDLLGKKLDTESTKKIESQLEQLKQRVLNKVPSQQDVIDMSAQVDEINERIVMLATETQSLISDLKFSVREDLNKTTTDLTNNVESSITEQSESVKKELGKLYDKVDGLHKDLVEVSTLIDKAKNTFFGKSVFKEKK*
Ga0063391_100181352	F036269	N/A	MKESPIDSIIIDLILEHYNMLSLSHRKPTLSDIEFDDIVKYAQEVYYKRIMEDTPMGVEGKA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0063391_1001813

Overview

Ecosystem & Geography

Associated Families

Sequences