Scaffold Ga0063391_1001185

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1001185
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58311
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (10.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100118531	F004866	GAG	MALVNKVDLKLKVDIELSIKYQIVTYCFFNNIPISASDLNFLKELSKKDNIELTKFCIELVNLNIFKSPQSARNAITKAEKKNLLFKTGNNKKTISINKDINIQNKGLVLLDYKVLGSESKES*
Ga0063391_100118532	F006666	N/A	VNPKSHKEFKKGIAEKVGVHPSVVDDFITFYYAKLRKSLSNLNYPRIQVDGLGTFHIRKKRLEHSIKKNKSILGNLKKRTYKGFAQSENILFNINIMEKALEQLEKDIIKKKNFKDANKELE*
Ga0063391_100118542	F020206	N/A	MGVDVKLANKTTEFTNLSVSKIIASKAVGKDILLRDHANNAAAVAAGLAVGDLYHSSGDLKIVVS*