Basic Information | |
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Taxon OID | 3300003937 Open in IMG/M |
Scaffold ID | Ga0063391_1001093 Open in IMG/M |
Source Dataset Name | SPOT_150m_metagenome_year |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of California, Davis |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37598 |
Total Scaffold Genes | 70 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (35.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study |
Source Dataset Sampling Location | ||||||||
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Location Name | San Pedro Channel, Pacific | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.42 | Alt. (m) | Depth (m) | 890 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025718 | Metagenome | 200 | Y |
F029925 | Metagenome / Metatranscriptome | 187 | Y |
F060426 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0063391_100109326 | F060426 | N/A | MIKNDTQLKGFDDLTFGQHGGFAPGKARQARLTFGQRDKDNQDQFTISVVQNLNDGTGLYGHIDDNTYEVAMWFQDRDTMLPLSKYDDVLAHQTPVQVTQLMHQAQLNDFAWVTLLHSLRDDHRKDLDLD* |
Ga0063391_100109333 | F029925 | AGGA | MFILKSILNQAGSVWQVETIAMRKKDAERLLRRRLANNDGSRRYGLFKA* |
Ga0063391_100109340 | F025718 | N/A | MIKNKRVNGFIAKVNIVDRKTGDIIAENQILKCEHHDSIKSLNRDLAKFGLPRKFEFVKWVA* |
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